Tagged bioinformatics

Run initial single-cell and bioinformatics data analysis with QC and reports

Infer ancestry from consumer DNA files and compare ancestry-specific effect sizes

Detect Neanderthal and Denisovan DNA segments in modern human genomes

Find and download the genomics data files behind a paper from its DOI or PubMed ID

Route bioinformatics requests to specialized analysis skills and plan the pipeline

Find Bioconductor packages and generate starter code for a bioinformatics workflow

Run FastQC and MultiQC sequencing quality control with charts and an MCP server

Assess genome, transcriptome and protein completeness with BUSCO

Score how specific a gene's expression is across cell types in a single-cell atlas

Run ancestry PCA against Simons Genome Diversity Project reference data

Profile shotgun metagenomes for taxonomy, resistance genes and pathways

Find clinical trials for a gene, variant or condition from ClinicalTrials.gov

Screen genotypes against disease gene panels and rank carried variants by significance

Look up pharmacogenomic gene-drug data, CPIC guidelines and FDA drug labels

Rank CRISPR screen hits from guide-level count tables with deterministic scoring

Summarize differential expression results into ranked genes and biological themes

Predict gene expression from H&E tissue tiles for the genes you name

Chart bulk RNA-seq and single-cell marker results with publication-ready figures

Run population genetics stats on aligned DNA or VCFs for diversity and neutrality

Look up ENA sequencing runs and download FASTQ files by accession

Fetch cis-eQTL statistics for a gene region from the EBI eQTL Catalogue

Find, recommend and run Galaxy bioinformatics tools from usegalaxy.org

Compare your genome to the PGP-1 reference and estimate ancestry mix

Score genetic compatibility across male-female pairs in a Genomebook generation

Predict gene and transcript structure from a DNA sequence via a hosted API

Predict chromatin state, histone marks and TF binding from DNA sequences

Predict enhancer activity scores across windows of a DNA sequence

Predict tissue and cell-type gene expression from DNA near a transcription start site

Detect promoter regions in DNA sequences with a hosted transformer model

Detect splice donor and acceptor sites in DNA sequences with a hosted model

Fetch GWAS summary statistics for one genomic window from the GWAS Catalog

Look up a variant across eight genomic databases including GWAS Catalog and GTEx

Call HLA alleles from whole-genome or whole-exome VCF files

Compute pairwise LD between a lead variant and nearby variants using 1000 Genomes

Estimate epigenetic age from DNA methylation arrays with PyAging clocks

Combine QC reports from many bioinformatics tools into one MultiQC HTML report

Download NCBI genomes, genes, virus sequences and taxonomy with the datasets CLI

Run nf-core RNA-seq preprocessing from FASTQ or BAM with preflight checks

Run nf-core RNA structure analysis from chemical probing reads to 2D diagrams

Run nf-core Sarek variant calling for germline and somatic sequencing data

Run nf-core single-cell RNA-seq preprocessing from FASTQ with preflight checks

Build a nutrition report from consumer DNA data with diet guidance from SNPs

Explore organ-specific proteomic aging clocks with per-protein contribution breakdowns

Run gene-set pathway enrichment across KEGG, GO, Reactome and more with charts

Build a pharmacogenomic report from consumer DNA data covering 12 genes and 51 drugs

Run fast genomic interval joins, overlaps and coverage on Polars DataFrames

Merge genomic skill results into one personal genomic profile document

Detect expression outliers in blood RNA-seq for rare disease diagnosis

Simulate offspring genomes from parent pairs with meiotic recombination and mutation